Closed csw closed 2 years ago
Some files, e.g. http://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/maf/upstream1000.maf.gz, have inconsistent reference sequences. This blows up the indexing code, and it's not entirely clear what the correct approach is. Need to figure this out and then fix KyotoIndex#entries_for accordingly.
KyotoIndex#entries_for
Some files, e.g. http://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/maf/upstream1000.maf.gz, have inconsistent reference sequences. This blows up the indexing code, and it's not entirely clear what the correct approach is. Need to figure this out and then fix
KyotoIndex#entries_foraccordingly.