Discrepancy in index scan results vs. bx-python

csw / bioruby-maf

MAF parser for BioRuby

MIT License

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Closed csw closed 12 years ago

csw commented 12 years ago

Index scan with chr22-b.bed gives 12563 matches with bx-python vs. 12557 with bio-maf.

csw commented 12 years ago

Confirmed that it was merely some blocks being matched multiple times due to different ways the scan is being done. Not a bug.