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ctSkennerton / crass

The CRISPR assembler
http://ctskennerton.github.io/crass
GNU General Public License v3.0
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libcrispr libraries not found #63

Closed nick-youngblut closed 11 years ago

nick-youngblut commented 11 years ago

I'm trying to install CRASS on an Ubuntu x86_64 machine, and am getting the following error when running ./configure:

""" checking for libcrispr headers in /usr/local/include and /usr/local/include/libcrispr... found checking for libcrispr libraries... not found checking for libcrispr... no configure: error: Cannot find licrispr """

The libraries appear to be in /usr/local/lib/, but the configure script can't seem to find them. Any ideas on what is going wrong?

Thanks for the help. Nick

ctSkennerton commented 11 years ago

It's very strange that it finds the header but not the library. Can you try rerunning configure with the following ./configure --with-libcrispr=/usr/local and see if that fixes it?

nick-youngblut commented 11 years ago

I tried "./configure --with-libcrispr=/usr/local" and got the same error message. Any other suggestions?

Nick

ctSkennerton commented 11 years ago

Is xerces also installed in /usr/local?

nick-youngblut commented 11 years ago

xerces is in "/usr/local/include/xercesc"

ctSkennerton commented 11 years ago

The only other thought that I have is to symlink the library and headers in /usr/local/{include,lib} to /usr/{include,lib}, and see if that changes anything.

ctSkennerton commented 11 years ago

Hey @nyoungb2 Another user had a similar problem you should checkout the comments in issue #64 and see if that fix works for you

nick-youngblut commented 11 years ago

I recently tried your symlink suggestion, and it worked. Thank you for the help.

Nick

Nicholas D. Youngblut
Ph.D Candidate
Rachel Whitaker Lab
Microbiology Department
University of Illinois at Urbana-Champaign

From:  "Connor T. Skennerton" <notifications@github.com>
Reply-To:  ctSkennerton/crass
<reply+i-12938634-dd3fdb31844eb465ee77b05aab1115ebef487f91-2468572@reply.git
hub.com>
Date:  Tuesday, April 23, 2013 8:21 AM
To:  ctSkennerton/crass <crass@noreply.github.com>
Cc:  Nicholas Youngblut <nyoungb2@gmail.com>
Subject:  Re: [crass] libcrispr libraries not found (#63)

Hey @nyoungb2 <https://github.com/nyoungb2>
Another user had a similar problem you should checkout the comments in issue
#64 <https://github.com/ctSkennerton/crass/issues/64>  and see if that fix
works for you

‹
Reply to this email directly or view it on GitHub
<https://github.com/ctSkennerton/crass/issues/63#issuecomment-16857357> .