Closed kosack closed 5 years ago
I also created an environment.yml file for conda so that a correct environment needed to run the notebooks can be setup (minus the input data files themselves, which we'll have to distribute separately since we shouldn't put large files in git).
This changes the structure of the repository to begin to cleanly separate notebooks that process data from those that analyze outputs (so far no changes to the notebooks themselves have been made)
There is also now a
build.py
script that uses Papermill to execute and render the notebooks to a BUILD directory in an automated fashion. It's fairly simplistic so far, but can grow to include parameters, and other features of Papermill (https://github.com/nteract/papermill)