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ctg-lund / Yggdrasil

the backbone of the CTG pipelines
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Delivery process #5

Closed chaetognatha closed 6 months ago

chaetognatha commented 1 year ago

The delivery is a simple rsync of the complete processed data to LFS

chaetognatha commented 1 year ago

if you make the input and output parts I can just paste in the rsync command into the process!

lokeshbio commented 1 year ago

The process is now written to have the folder structure we wanted like: ${proj}/${fc}/0_fastq/ and ${proj}/${fc}/1_qc/. Here the publishdir has the default location of where the seq-only files need to be deposited and in case of test runs it can also be given as --outdir in NF

lokeshbio commented 1 year ago

The default location is "${params.project_root}" in config!

chaetognatha commented 1 year ago

Working on pull request!

lokeshbio commented 1 year ago

The NF delivery process PUBLISH_SEQ_QC is complete now! I will still make some final changes for the seqonly!

lokeshbio commented 1 year ago