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ctg-lund / singleCellWorkflows

MIT License
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Add docs #42

Closed Fattigman closed 1 year ago

Fattigman commented 1 year ago

What have I done

Added the manual steps of processing, which this pipeline automates. Added process details for what is done in a pipeline.

Fattigman commented 1 year ago

Added a parameter that points to which email address that the data is going to be delivered to called delivered_to which is set to henning.onsbring@med.lu.se currently. Should change to CTGBNF@med.lu.se when we get that working in the future.

Usage example:

nextflow run main.nf --samplesheet /full/path/samplesheet.csv --delivered_to mattis.knulst@med.lu.se

But as I mentioned, it is possible to omit --delivered_to flag.