ctg-lund / singleCellWorkflows

MIT License
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Added nextflow conf for cellranger argument #45

Closed Fattigman closed 1 year ago

Fattigman commented 1 year ago

You can add a cellranger_arguments flag to manually input cellranger arguments when needed, like:

nexflow run main.nf --samplesheet /full/path/samplesheet.csv --cellranger_arguments "--force-cells=1000"
henningonsbring commented 1 year ago

this is really great