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ctg-lund / singleCellWorkflows

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send bam flag #57

Closed henningonsbring closed 6 months ago

henningonsbring commented 6 months ago

Background

v8.0.0 require that you choose --create-bam <true|false>, there is no deafult

Problem/Issue

We do not set this flag for SCCITESEQ:COUNT

What have I done

Now --create-bam will be false unless true is specified

Check list

I have:

[ ] Tested with Stub run
[ ] Tested on our HPC