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ctlab / fgsea

Fast Gene Set Enrichment Analysis
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error: Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'NULL' appearing when launching fgsea() #122

Closed klai001 closed 2 years ago

klai001 commented 2 years ago

Hi I have previously ran fgsea without any problems but recently i've encountered this error

error message:

Error in base::options() : Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'NULL'

upon running this: res_fgsea <- fgsea(pathways = go.list, stats = wtlps.ranks,BPPARAM = SnowParam())

i guessed it's something to do with the package, so when i uninstalled fgsea and attempt to reinstall fgsea using the following code devtools::install_github("ctlab/fgsea")

but i still get the same error message when running fgsea()

would appreciate some suggestions. thank you!