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ctlab / fgsea

Fast Gene Set Enrichment Analysis
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GESECA function not existing #125

Closed DirtyHarry80 closed 2 years ago

DirtyHarry80 commented 2 years ago

I am trying to replicate your work on spatial transcriptomics data, however in your script you are using a function "geseca" which does not exist in any of the libraries you load in your script. So where the heck does this function come from?

assaron commented 2 years ago

geseca() is available in fgsea package starting from version 1.24. You can install it from the recent Bioconductor release (which happened a week ago) or install the version from GitHub.

DirtyHarry80 commented 2 years ago

Thank you that worked well but from GitHub (not from Bioconductor, which kept installing the old versions).

assaron commented 2 years ago

You need an R>=4.2 to be able to upgrade to the latest Bioconductor release.