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ctlab
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fgsea
Fast Gene Set Enrichment Analysis
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Question about collapsePathways() logic
#63
jasonvrogers
closed
4 years ago
6
fgsea for many rank vectors
#62
ivokwee
closed
4 years ago
1
Cannot install fgsea
#61
suekn
closed
4 years ago
2
Set fgseaMultilevel as a default method
#60
vdsukhov
closed
4 years ago
1
Fix simpleError and Multilevel Error comparison, add gseaParam to fgseaMultilevel
#59
vdsukhov
closed
4 years ago
0
plotEnrichment ranks labels
#58
igordot
opened
4 years ago
2
fgseaMultilevel() hangs with some pathway/gene combinations
#57
igordot
closed
5 years ago
4
Add conditional probability processing
#56
vdsukhov
closed
5 years ago
1
Significance of gene-sets higher with increasing nperm values?
#55
pabloivan
closed
5 years ago
3
Add exact algorithm as additional external data
#54
vdsukhov
closed
5 years ago
1
Ranking metric ascending or descending
#53
malaybasu
closed
5 years ago
2
Bug fixes
#52
vdsukhov
closed
5 years ago
1
Syntax issue on line 08
#51
kant
closed
5 years ago
0
scRNA-seq: how to create the Ranked list?
#50
asmariyaz23
opened
5 years ago
17
running fgsea
#49
zal4002
closed
5 years ago
6
Merge pull request #1 from ctlab/master
#48
bioinfonerd
closed
5 years ago
1
fGSEA for counting data
#47
Arash-Iranzadeh
closed
5 years ago
2
Fix multilevelError function
#46
vdsukhov
closed
5 years ago
2
scoring scheme
#45
Stefan-Hinz
closed
5 years ago
2
Standard errors for Normal enrichment score
#44
saksham219
closed
5 years ago
4
Add option to plotGseaTable to return plot
#43
chrismiddleton
closed
5 years ago
1
plotGseaTable saveable to a variable like plotEnrichment
#42
chrismiddleton
closed
5 years ago
7
Code refactoring
#41
vdsukhov
closed
5 years ago
1
Error in plotGseaTable()
#40
PaulineMarangoni
closed
5 years ago
11
Speed up of perturbate
#39
BudAlNik
closed
4 years ago
1
Improved the use of the absEps parameter
#38
vdsukhov
closed
5 years ago
1
Loading own data
#37
PaulineMarangoni
closed
5 years ago
3
Revert duplicate_sets. Changed the number of steps in the calcPvalues…
#36
vdsukhov
closed
5 years ago
1
fgseaMultilevel throws warning for rank ties
#35
vdsukhov
closed
5 years ago
1
Fixed bugs in fgseaMultilevel
#34
vdsukhov
closed
5 years ago
1
do you only support ENTREZ ids ?
#33
serine
closed
5 years ago
1
Better - opensource licence ?
#32
serine
closed
5 years ago
1
problem loading the package
#31
ortzf
closed
5 years ago
1
Add some input checks
#30
llrs
closed
5 years ago
2
Plot modifications
#29
obruck
closed
2 years ago
4
Implemented new features based on adaptive multilevel splitting Monte…
#28
vdsukhov
closed
6 years ago
0
Add support for one-tailed GSEA tests
#27
khughitt
closed
4 years ago
9
collapsePathways() errors in padj threshold-dependent fashion after successful fgsea() run
#26
ajw2329
closed
1 year ago
10
Added \n to warning and fixed typo in collapsePathways description
#25
luciorq
closed
6 years ago
0
Error in plotEnrichment() when input contains NA values.
#24
bdemarest
closed
1 year ago
1
No Significant pvalue_adjusted
#23
tiagobrc
closed
6 years ago
3
Issue with ranking
#22
ktroule
closed
6 years ago
4
Setting colwidth to zero doesn't seem to work properly
#21
konsolerr
closed
6 years ago
0
Warning for ties in stats
#20
ToledoEM
closed
6 years ago
5
fgsea never ending
#19
llrs
closed
6 years ago
10
Preranked metric ties
#18
ToledoEM
opened
6 years ago
4
Change size of vertical lines
#17
jchellmuth
closed
6 years ago
1
Parallel backend running out of resources
#16
topherconley
closed
6 years ago
2
Crash running fgsea example
#15
jperales
closed
6 years ago
3
Reproducibility fix
#14
assaron
closed
6 years ago
0
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