Closed Celia5 closed 4 years ago
That's very strange. Can you please do the following:
If it fails, please do the same for https://artyomovlab.wustl.edu/phantasus-dev/?preloaded=GSE53986.Ctrl.vs.LPS and for https://ctlab.itmo.ru/phantasus/?preloaded=GSE53986.Ctrl.vs.LPS
Hello,
When I try to run the FGSEA using the datasets you provided, it works just fine.
However when I try it on my dataset (either as a .gct or starting fresh from importing the original .tsv file) I receive either a "504 gateway timeout" error if I try using entrezgene or ensemble geneIDs as the Gene ID column, or a "FGSEA returned 0 rows. Nothing to show" error if I use the gene name. These are human genes but when I ran FGSEA a few months ago using the "gene name" it worked just fine using various databases.
From: Alexey Sergushichev notifications@github.com Sent: Saturday, September 19, 2020 2:57 AM To: ctlab/phantasus phantasus@noreply.github.com Cc: Cubitt, Celia celia.cubitt@wustl.edu; Author author@noreply.github.com Subject: Re: [ctlab/phantasus] Proxy Error (#157)
That's very strange. Can you please do the following:
If it fails, please do the same for https://artyomovlab.wustl.edu/phantasus-dev/?preloaded=GSE53986.Ctrl.vs.LPS and for https://ctlab.itmo.ru/phantasus/?preloaded=GSE53986.Ctrl.vs.LPS
— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/ctlab/phantasus/issues/157#issuecomment-695193258, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ARBXUBWGNSWEAOA2K3IKPH3SGR6CPANCNFSM4RSS6JCQ.
Ok, can you attach the dataset? If you don't want to make it public, you can send it to my e-mail (alsergbox@gmail.com)
The issue has been resolved
I receive a Proxy Error every time I try to run an FGSEA on my RNA-seq data. When I analyzed this data using phantasus several months ago there was no issue. I have tried running the FGSEA on different computers, browsers, wifi networks, etc but keep getting this error:
Failed to perform FGSEA. Error: Proxy Error The proxy server received an invalid response from an upstream server. The proxy server could not handle the request POST /phantasus/ocpu/library/phantasus/R/performFGSEA/print. Reason: Error reading from remote server
Apache/2.4.18 (Ubuntu) Server at artyomovlab.wustl.edu Port 443