Started working on a dataset again that I had no issues with and now whenever I try to either calibrate with own data, or just apply a UERE value, the app shows "invalid symbol parameter". When trying to process with uncalibrated data, I get an error later that summary character was not found.
I have had no problems with the same calibration and datafile before in the app.
I just tried to run it in R and get no issues (however want to keep using the webapp preferable for upcoming work).
Initially I thought it might be a timestamp error or something, but I also tried importing the data directly from movebank and experience the same problems.
Any quick advice would be greatly appreciated, I am in the final stages of my phd data analyses. Thanks in advance!
I'll post info from the R console below:
Calibration error:
Warning: Error in graphics::symbols: invalid symbol parameter
172: graphics::symbols
171: utils::getS3method("plot", CLASS)
170: plot.list
168: renderPlot [C:/R-library/ctmmweb/app/server.R#1087]
166: func
126: drawPlot
112:
96: drawReactive
83: origRenderFunc
82: output$error_plot
2: shiny::runApp
1: app
[2019-10-25 19:03:24] saving plot as
plot_5_histogram_2019-10-25_19-03-24.png
Saving 14.4 x 3.89 in image
user system elapsed
1.32 0.24 1.61
without calibration when trying to process data:
[2019-10-25 17:51:18] Movebank data imported
576876709
[2019-10-25 17:51:18] ## Visualization
[2019-10-25 17:51:18] Current selected individuals
identity start end interval (minutes) duration (days) points calibrated
1: CHO 2017-07-26 11:11 2017-07-29 09:39 3.02 2.94 596 no
2: DOT 2017-07-22 12:00 2017-07-26 08:05 3.02 3.84 768 no
3: FRA 2017-02-20 11:42 2017-02-27 19:55 3.00 7.34 732 no
4: GEG 2017-02-25 13:24 2017-02-28 15:15 3.00 3.08 621 no
5: LOC_1min 2016-09-08 13:30 2016-09-10 09:05 1.00 1.82 796 no
6: LOC_3min 2016-09-08 13:30 2016-09-10 09:04 3.00 1.82 281 no
[2019-10-25 17:51:19] saving plot as
plot_5_histogram_2019-10-25_17-51-19.png
Saving 14.4 x 3.89 in image
user system elapsed
3.28 0.17 3.62
[2019-10-25 17:51:35] Current selected individuals
identity start end interval (minutes) duration (days) points calibrated
1: GEG 2017-02-25 13:24 2017-02-28 15:15 3 3.08 621 no
[2019-10-25 17:51:36] saving plot as
plot_5_histogram_2019-10-25_17-51-36.png
Saving 14.4 x 3.89 in image
user system elapsed
1.00 0.15 1.18
[2019-10-25 17:51:44] ## Model Selection
[2019-10-25 17:51:45] saving plot as
vario_2019-10-25_17-51-45.png
[2019-10-25 17:51:48] saving plot as
vario_2019-10-25_17-51-48.png
[2019-10-25 17:51:52] Trying different models...
trying models on single animal with all but one cores
Fitting model OUF isotropic error.
Fitting models OUF anisotropic error.
Fitting models OU anisotropic error, OUf anisotropic error.
user system elapsed
1078.70 2.41 1142.98
Warning: Error in utils::getS3method: S3 method 'summary.character' not found
141: [.data.table
139: ctmmweb:::compare_models
138: [C:/R-library/ctmmweb/app/server.R#2117]
122: try_models
121: [C:/R-library/ctmmweb/app/server.R#2130]
105: summary_models
103: exprFunc [C:/R-library/ctmmweb/app/server.R#2197]
102: widgetFunc
101: func
88: origRenderFunc
87: renderFunc
83: origRenderFunc
82: output$tried_models_summary
2: shiny::runApp
1: app
Started working on a dataset again that I had no issues with and now whenever I try to either calibrate with own data, or just apply a UERE value, the app shows "invalid symbol parameter". When trying to process with uncalibrated data, I get an error later that summary character was not found. I have had no problems with the same calibration and datafile before in the app. I just tried to run it in R and get no issues (however want to keep using the webapp preferable for upcoming work). Initially I thought it might be a timestamp error or something, but I also tried importing the data directly from movebank and experience the same problems. Any quick advice would be greatly appreciated, I am in the final stages of my phd data analyses. Thanks in advance!
I'll post info from the R console below:
Calibration error: Warning: Error in graphics::symbols: invalid symbol parameter 172: graphics::symbols 171: utils::getS3method("plot", CLASS) 170: plot.list 168: renderPlot [C:/R-library/ctmmweb/app/server.R#1087] 166: func 126: drawPlot 112:
96: drawReactive
83: origRenderFunc
82: output$error_plot
2: shiny::runApp
1: app
[2019-10-25 19:03:24] saving plot as
plot_5_histogram_2019-10-25_19-03-24.png
Saving 14.4 x 3.89 in image
user system elapsed
1.32 0.24 1.61
without calibration when trying to process data: [2019-10-25 17:51:18] Movebank data imported 576876709 [2019-10-25 17:51:18] ## Visualization
[2019-10-25 17:51:18] Current selected individuals identity start end interval (minutes) duration (days) points calibrated 1: CHO 2017-07-26 11:11 2017-07-29 09:39 3.02 2.94 596 no 2: DOT 2017-07-22 12:00 2017-07-26 08:05 3.02 3.84 768 no 3: FRA 2017-02-20 11:42 2017-02-27 19:55 3.00 7.34 732 no 4: GEG 2017-02-25 13:24 2017-02-28 15:15 3.00 3.08 621 no 5: LOC_1min 2016-09-08 13:30 2016-09-10 09:05 1.00 1.82 796 no 6: LOC_3min 2016-09-08 13:30 2016-09-10 09:04 3.00 1.82 281 no [2019-10-25 17:51:19] saving plot as plot_5_histogram_2019-10-25_17-51-19.png Saving 14.4 x 3.89 in image user system elapsed 3.28 0.17 3.62 [2019-10-25 17:51:35] Current selected individuals identity start end interval (minutes) duration (days) points calibrated 1: GEG 2017-02-25 13:24 2017-02-28 15:15 3 3.08 621 no [2019-10-25 17:51:36] saving plot as plot_5_histogram_2019-10-25_17-51-36.png Saving 14.4 x 3.89 in image user system elapsed 1.00 0.15 1.18 [2019-10-25 17:51:44] ## Model Selection
[2019-10-25 17:51:45] saving plot as vario_2019-10-25_17-51-45.png [2019-10-25 17:51:48] saving plot as vario_2019-10-25_17-51-48.png [2019-10-25 17:51:52] Trying different models...
trying models on single animal with all but one cores
Thanks a lot in advance!!