ctmm-initiative / ctmmweb

Web app for analyzing animal tracking data, built upon ctmm R package
http://biology.umd.edu/movement.html
GNU General Public License v3.0
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invalid symbol parameter after UERE; Warning: Error in utils::getS3method: S3 method 'summary.character' not found #104

Closed frdmnn closed 3 years ago

frdmnn commented 4 years ago

Started working on a dataset again that I had no issues with and now whenever I try to either calibrate with own data, or just apply a UERE value, the app shows "invalid symbol parameter". When trying to process with uncalibrated data, I get an error later that summary character was not found. I have had no problems with the same calibration and datafile before in the app. I just tried to run it in R and get no issues (however want to keep using the webapp preferable for upcoming work). Initially I thought it might be a timestamp error or something, but I also tried importing the data directly from movebank and experience the same problems. Any quick advice would be greatly appreciated, I am in the final stages of my phd data analyses. Thanks in advance!

I'll post info from the R console below:

Calibration error: Warning: Error in graphics::symbols: invalid symbol parameter 172: graphics::symbols 171: utils::getS3method("plot", CLASS) 170: plot.list 168: renderPlot [C:/R-library/ctmmweb/app/server.R#1087] 166: func 126: drawPlot 112: 96: drawReactive 83: origRenderFunc 82: output$error_plot 2: shiny::runApp 1: app [2019-10-25 19:03:24] saving plot as plot_5_histogram_2019-10-25_19-03-24.png Saving 14.4 x 3.89 in image user system elapsed 1.32 0.24 1.61

without calibration when trying to process data: [2019-10-25 17:51:18] Movebank data imported 576876709 [2019-10-25 17:51:18] ## Visualization
[2019-10-25 17:51:18] Current selected individuals identity start end interval (minutes) duration (days) points calibrated 1: CHO 2017-07-26 11:11 2017-07-29 09:39 3.02 2.94 596 no 2: DOT 2017-07-22 12:00 2017-07-26 08:05 3.02 3.84 768 no 3: FRA 2017-02-20 11:42 2017-02-27 19:55 3.00 7.34 732 no 4: GEG 2017-02-25 13:24 2017-02-28 15:15 3.00 3.08 621 no 5: LOC_1min 2016-09-08 13:30 2016-09-10 09:05 1.00 1.82 796 no 6: LOC_3min 2016-09-08 13:30 2016-09-10 09:04 3.00 1.82 281 no [2019-10-25 17:51:19] saving plot as plot_5_histogram_2019-10-25_17-51-19.png Saving 14.4 x 3.89 in image user system elapsed 3.28 0.17 3.62 [2019-10-25 17:51:35] Current selected individuals identity start end interval (minutes) duration (days) points calibrated 1: GEG 2017-02-25 13:24 2017-02-28 15:15 3 3.08 621 no [2019-10-25 17:51:36] saving plot as plot_5_histogram_2019-10-25_17-51-36.png Saving 14.4 x 3.89 in image user system elapsed 1.00 0.15 1.18 [2019-10-25 17:51:44] ## Model Selection
[2019-10-25 17:51:45] saving plot as vario_2019-10-25_17-51-45.png [2019-10-25 17:51:48] saving plot as vario_2019-10-25_17-51-48.png [2019-10-25 17:51:52] Trying different models...
trying models on single animal with all but one cores

Thanks a lot in advance!!

xhdong-umd commented 4 years ago

Is it possible for you to send a small sample data to me so I can reproduce the problem?

My email can be found in the DESCRIPTION file in package.