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ctmrbio / claritylims

Customizations for our GenoLogics BaseSpace Clarity LIMS
MIT License
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rewrite covidseq workflow #284

Open boulund opened 3 years ago

boulund commented 3 years ago

Import samples from Tecan file instead. Fetch data upon sample sheet generation from NPC covid_samples database instead of reading from UDFs.

boulund commented 3 years ago

Note that sample name conventions will need to change, as the information in the previous scheme is no longer guaranteed to be available at sample creation:

SAMPLEID_REGIONCODE_LABCODE_DATETIME

will be replaced with:

SAMPLEID_DATETIME

This introduces a potential issue since sample IDs are not guaranteed to be unique without region or lab code information. Not sure how we want to handle that at this time.