This PR expands the simple option of pollen_data_gen as sketched out in #96.
That is, simple now accepts a graph and emits a lengthy legal JSON that has:
No loss, so a roundtrip is possible.
All the info that a depth accelerator will want from the graph.
The depth-specific stuff can just be jq-ed out of the simple output. It matches exine exactly, and so this is what we have in turnt now.
Try it with
pollen_data_gen simple test/note5.gfa | jq .depth
To check that this is lossless, run
pollen_data_gen roundtrip test/note5.gfa
Silence is good: it means that an assertion of equality has not been failed.
This code is all kinda idiosyncratic and nasty, and I'd appreciate any thoughts about making it nicer. Docstrings explain the encoding/decoding rules I've made up as I went along.
This PR expands the
simpleoption ofpollen_data_genas sketched out in #96.That is,
simplenow accepts a graph and emits a lengthy legal JSON that has:depthaccelerator will want from the graph.The depth-specific stuff can just be
jq-ed out of thesimpleoutput. It matchesexineexactly, and so this is what we have in turnt now. Try it withTo check that this is lossless, run
Silence is good: it means that an assertion of equality has not been failed.
This code is all kinda idiosyncratic and nasty, and I'd appreciate any thoughts about making it nicer. Docstrings explain the encoding/decoding rules I've made up as I went along.
Closes #96.