Depth instructions don't work as written

[anshumanmohan]

I suspect this is something minor, and I'd fix it myself, but I've gotten a little turned around by the way pollen-py is engineered (see also, https://github.com/cucapra/pollen/issues/90).

I get the following error when I run the one-liner test:

$ exine depth -a -r test/k.og
[fud] ERROR: `.futil' corresponds to multiple stages: ['futil', 'calyx']. Please provide an explicit stage using --to or --from.

And I get the same error when I try the more verbose option:

make fetch
make test/k.og
exine depth -o depth.futil
exine depth -d test/k.og -o depth.data
exine depth -r depth.data --accelerator depth.futil

I am using the latest copy of Calyx and I have configured it as instructed in our README.

[sampsyo]

Ah, this is an artifact of https://github.com/cucapra/calyx/pull/1493. There used to be a stage called futil; it is now called calyx. Because of a somewhat odd way that fud works w/r/t setting up stages, you may have a futil stage lingering on your machine.

Take a look at fud config; there is probably a [stages.futil] section hanging around. You can edit the file indicated at the top of the fud config output and delete that section.

[susan-garry]

Yes, this looks like an issue with fud's configuration. You can remove stages.futil with fud config --remove stages.futil, and you may need to set stages.calyx.exec with fud config -c stages.calyx.exec <path-to-calyx>/.target/debug/calyx.

[anshumanmohan]

Thank you, will check and confirm! But just to be clear, this does not require any changes to the docs at all?

[anshumanmohan]

Whoops, this was in fact addressed by #120