Lots more FlatGFA Python business - Githubissues

cucapra / pollen

generating hardware accelerators for pangenomic graph queries

MIT License

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Lots more FlatGFA Python business #177

Closed sampsyo closed 1 month ago

sampsyo commented 1 month ago

Some new features in the Python FlatGFA bindings:

expose path steps via for step in path: ...
expose links
look up paths and segments by name with g.paths.find() and g.segments.find()
str(g) gives you a GFA string
write GFAs to files with g.write_gfa() and g.write_flatgfa()

Getting kinda close to feature-complete for an MVP.