Test refactor - Githubissues

cucapra / pollen

generating hardware accelerators for pangenomic graph queries

MIT License

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Test refactor #18

Closed susan-garry closed 1 year ago

susan-garry commented 1 year ago

I made use of the new turnt feature to clean up the testing process:

Node depth tests are in test/depth
Node depth tests expect .og files instead of .gfa files; no longer generate .og files for each test

To easily create a testing process for another odgi subcommand, one can now run cp -r test/depth test/<new-command> and edit the turnt.toml files accordingly.

susan-garry commented 1 year ago

Having fewer files floating around is good for the soul.

I just added a "Testing" section to the README to clarify how to install the latest, in-development version of turnt.

sampsyo commented 1 year ago

The README section looks great!

sampsyo commented 1 year ago

Just to make your life slightly more complicated, I have hit the button to release Turnt v1.9.0: https://pypi.org/project/turnt/1.9.0/

susan-garry commented 1 year ago

That's great! Better to deal with this now than find out the README is out of date a few months down the line.