cucapra / pollen

generating hardware accelerators for pangenomic graph queries
MIT License
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slow-odgi: Make a little top-level CLI #33

Closed sampsyo closed 1 year ago

sampsyo commented 1 year ago

This is purely a quality-of-life thing, but it would be cool to make a top-level CLI entry point for the slow-odgi commands. In particular, what is currently python3 slow_odgi/flip.py could become slow-odgi flip, i.e., we'd make an installable executable called slow-odgi with several subcommands.

The concrete steps for this would be:

Probably best to ignore this until after #29 and #31 are merged.

anshumanmohan commented 1 year ago

Going to wait until #48 lands, since the changes proposed here will create a large diff and create further opportunities for tidying! Those may clash with the cleanup of 48.