Depth with file - Githubissues

cucapra / pollen

generating hardware accelerators for pangenomic graph queries

MIT License

27 stars 1 forks source link

Closed dc854 closed 2 years ago

dc854 commented 2 years ago

Removed dependency on gfapy
format_gfa.py will now turn a .gfa file to a flat file format or return a list of segments in all path
depth.py changed to use the list of segments from format_gfa.py
depth2.py will generate a .json file if the provided a .gfa file when called