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cucapra / pollen

generating hardware accelerators for pangenomic graph queries
MIT License
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Depth of a subset of paths #76

Closed anshumanmohan closed 1 year ago

anshumanmohan commented 1 year ago

A minor complication is possible in depth: instead of querying the depths of nodes where a crossing by any path counts, we now accept a list of paths that should be included in this depth calculation. This PR beefs up slow-odgi's implementation of depth in exactly this way.

anshumanmohan commented 1 year ago

The docs explain the flag. We are mimicking -s here, but I don't follow how that differs from -R...