When running ldsc_preprocess.py,I get a KeyError
Number of variants in common: 673165
Found 0 duplicated variants
Traceback (most recent call last):
File "/Data/li_lab/xzj/03_Software/pleio/ldsc_preprocess.py", line 482, in
preprocess(args,log)
File "/Data/li_lab/xzj/03_Software/pleio/ldsc_preprocess.py", line 349, in preprocess
sumstat_data = generate_sumstat_data(data)
File "/Data/li_lab/xzj/03_Software/pleio/ldsc_preprocess.py", line 162, in init
self.check_sumstats()
File "/Data/li_lab/xzj/03_Software/pleio/ldsc_preprocess.py", line 297, in check_sumstats
check_allele_mismatch(A1)
File "/Data/li_lab/xzj/03_Software/pleio/ldsc_preprocess.py", line 270, in check_allele_mismatch
s = df.index[res].to_numpy[0]
TypeError: 'instancemethod' object has no attribute 'getitem'
Can you please let me know how to resolve this?
Thank you very much
Hi,
When running ldsc_preprocess.py,I get a KeyError Number of variants in common: 673165 Found 0 duplicated variants Traceback (most recent call last): File "/Data/li_lab/xzj/03_Software/pleio/ldsc_preprocess.py", line 482, in
preprocess(args,log)
File "/Data/li_lab/xzj/03_Software/pleio/ldsc_preprocess.py", line 349, in preprocess
sumstat_data = generate_sumstat_data(data)
File "/Data/li_lab/xzj/03_Software/pleio/ldsc_preprocess.py", line 162, in init
self.check_sumstats()
File "/Data/li_lab/xzj/03_Software/pleio/ldsc_preprocess.py", line 297, in check_sumstats
check_allele_mismatch(A1)
File "/Data/li_lab/xzj/03_Software/pleio/ldsc_preprocess.py", line 270, in check_allele_mismatch
s = df.index[res].to_numpy[0]
TypeError: 'instancemethod' object has no attribute 'getitem'
Can you please let me know how to resolve this?
Thank you very much