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cuhk-haosun / course-MBI6013

Material for Msc. research project MBI6013
GNU General Public License v3.0
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SRA ToolKit #17

Closed 223050025 closed 1 month ago

223050025 commented 2 months ago

Using SRA ToolKit to download the dataset

223050025 commented 2 months ago

Open NCBI, click Download on the icon, and then click Download Tools on the new page, and then you will see the download of SRA Toolkit. Click in and you will go to the download interface of the corresponding system

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223050025 commented 2 months ago

Or directly download and unzip: wget https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/3.0.7/sratoolkit.3.0.7-ubuntu64.tar.gz tar -zxvf sratoolkit.3.0.7-ubuntu64.tar.gz

223050025 commented 2 months ago

Full code to install SRA ToolKit (sra-tools): download and extract: wget https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/3.0.7/sratoolkit.3.0.7-ubuntu64.tar.gz tar -zxvf sratoolkit.3.0.7-ubuntu64.tar.gz

add this code in .bashrc file: nano ~/.bashrc export PATH=$PATH: / share/home/grp-sunhao/liyixiao/sratoolkit.3.1.0-centos_linux64/bin source ~/.bashrc

finish:

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Milokita commented 2 months ago

Pls convert this to a manual and put it in https://github.com/cuhk-haosun/doc-manual-pub