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cultivarium / GenomeSPOT

Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
https://cultivarium.org/
MIT License
34 stars 2 forks source link

biopython requirements #11

Open jvollme opened 1 month ago

jvollme commented 1 month ago

Your readme states under requirements "biopython>=1.81". However with biopython 1.81 pip returns the following error message:

genome-spot 1.0.1 requires biopython>=1.83, but you have biopython 1.81 which is incompatible.

jvollme commented 1 month ago

in fact, it seems that I had originally installed the correct newest biopython version (1.84, using conda), but using your installation instructions, pip changed it back to 1.81 which was then incompatible with xour repository on pypi.

It seems you need to update requirements.txt?

Edit: manually changing the requirements.txt to state biopython==1.84 indeed fixed the problem for me (although it may be better to set it as biopython>=1.83)