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cultivarium / MicrobeMod

A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
MIT License
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MAGs #16

Closed Thexiyang closed 6 months ago

Thexiyang commented 7 months ago

Thanks for this nice tool! Does this tool work also metagenome-assembled data from PB and Nanopore?

alexcritschristoph commented 7 months ago

So this should work with MAGs, but I would feed it one MAG (or contig, if you have a big contig say for a viral genome) as a genome at a time. It will not work for PacBio data unfortunately, only R10+ Nanopore data as it expects a BAM that can be read by ModKit: https://github.com/nanoporetech/modkit