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cumc
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pecotmr
Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
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fix to twas.R with test on UKBB-proteomics weights + UKBB LD + Bellenguez GWAS
#295
RuiDongDR
opened
2 days ago
0
skip twas_table$is_imputable filtering for quantile twas
#294
al4225
closed
1 week ago
0
add pval cutoff for imputabiliy, fix troublesome code
#293
Chunmingl
closed
1 week ago
0
minor fix
#292
Chunmingl
closed
1 week ago
0
rsq and pval name option and minor fixes
#291
Chunmingl
closed
1 week ago
0
allow for multiallelic when loading LD
#290
RuiDongDR
closed
1 week ago
0
add quantile_twas.R and add quantile_twas in twas.R
#289
al4225
closed
1 week ago
0
fix bug for NA result
#288
Chunmingl
closed
1 week ago
0
minor fix on syntax error
#287
al4225
closed
1 week ago
1
add corr_filter() when it is still not full rank after removing all problematic snps
#286
al4225
closed
2 weeks ago
0
add LD_ref_file and maf filtering as option
#285
al4225
closed
2 weeks ago
0
multi-mnm variant overlap fix
#284
Chunmingl
closed
2 weeks ago
0
minor fix
#283
AnqiWang2021
closed
2 weeks ago
0
minor fix
#282
Chunmingl
closed
2 weeks ago
0
add function z_to_beta_se
#281
RuiDongDR
closed
1 week ago
1
update README
#280
danielnachun
closed
3 weeks ago
0
fix dependencies
#279
danielnachun
closed
3 weeks ago
0
Fix dependencies
#278
danielnachun
closed
3 weeks ago
0
fix dependencies
#277
danielnachun
closed
3 weeks ago
0
fix dependencies
#276
danielnachun
closed
3 weeks ago
0
minor fix for avoid non-matching variants going through allele_qc to throw error in mr
#275
Chunmingl
closed
3 weeks ago
0
fix README
#274
danielnachun
closed
3 weeks ago
0
fix README
#273
danielnachun
closed
3 weeks ago
0
fix DESCRIPTION
#272
danielnachun
closed
3 weeks ago
0
fix some issues with dependencies
#271
danielnachun
closed
3 weeks ago
1
Installation instructions are very much incomplete
#270
pcarbo
opened
3 weeks ago
15
fix quantile_twas_weight colnames missing issue
#269
al4225
closed
3 weeks ago
0
minor fix
#268
AnqiWang2021
closed
3 weeks ago
0
minor fix
#267
Chunmingl
closed
3 weeks ago
0
quantile_twas_weight, fix singular matrix in rq, add heter calculation
#266
al4225
closed
3 weeks ago
0
define colname_ordered when output_twas_data is FALSE
#265
RuiDongDR
closed
3 weeks ago
0
add an option to output_twas_data = FALSE by default
#264
RuiDongDR
closed
1 month ago
0
Mash fix
#263
rfeng2023
closed
1 month ago
0
temporary remove bayesX methods
#262
Chunmingl
closed
1 month ago
1
update description version
#261
al4225
closed
1 month ago
0
remove export_twas_weights_db
#260
Chunmingl
closed
1 month ago
0
import packages
#259
al4225
closed
1 month ago
0
quantile_twas_weight.R and add functions in misc.R
#258
al4225
closed
1 month ago
0
add variant selection and max variant number
#257
Chunmingl
closed
1 month ago
0
ctwas loaders fand ormatting
#256
Chunmingl
closed
1 month ago
0
minor fix
#255
AnqiWang2021
closed
1 month ago
0
minor fix
#254
AnqiWang2021
closed
1 month ago
0
lapply loop
#253
Chunmingl
closed
1 month ago
0
revise load_multitrait_R_sumstats
#252
AnqiWang2021
closed
1 month ago
0
clean up loops
#251
Chunmingl
closed
1 month ago
0
replace model selections argument
#250
Chunmingl
closed
1 month ago
0
merge pipelines and clean up
#249
Chunmingl
closed
1 month ago
0
merge twas, ctwas, and twas_mr, clean up
#248
Chunmingl
closed
1 month ago
1
twas pipeline, fix load_twas_weights
#247
Chunmingl
closed
1 month ago
0
small fix
#246
Chunmingl
closed
1 month ago
0
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