Open yuqimiao opened 1 year ago
@yuqimiao thank you! I was under the impression from @hsun3163 investigation here that minfi and sesame output are very similar, see cell 219 on this notebook https://github.com/cumc/brain-xqtl-analysis/blob/main/analysis/Wang_Columbia/mqtl/sesame_vs_minfi.ipynb
I will take a closer look tomorrow after I am done with some teaching duties but in the meantime @hsun3163 could you double check? Your notebook doesn't have enough narrative so I am not sure if I interpreted your message correctly. Thanks!
Code for consistency check on cg00000957 measure
I choose cg00000957 since it is a cpg cite with low-pv mQTL in the original Ng2017xQTL paper.
Also tried other CpG sites that are extremely significant in Ng2017xQTL,