Closed hsun3163 closed 1 year ago
This error is due to an inherent problem in CUGG's check_snp function, where not all the snps will be compared. After the new fix this problem no longer existed. The corrected sumstat should be:
Total rows of query: 1682696 Total rows of subject: 1683176
Total exact: 1014648 Total flip: 783441 Total reverse: 230816 Total ambiguous: 232182
Total remaining: 1451880
All are done
This error should not impact the QTL results which took a separate route.
From the stderr:
In the stdout:
However, in the actual output, there are only:
It is a priority to solve this.