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cumc / xqtl-protocol

Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
https://cumc.github.io/xqtl-protocol/
MIT License
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pseudobulk expression notebooks #941

Closed al4225 closed 3 months ago

al4225 commented 3 months ago
  1. Notebook: pseudobulk_expression_aggregation_QC_norm.ipynb: for pseudobulk snseq data aggregation, qc and normalization, including sos workflow of 3 versions of psuedo bulk seurat rds objects, from aggregation to normalization. Comments and details are in the notebook.
  2. Notebook: pseudobulk_mega_expression_QC_and_normalization.ipynb: for pseudobulk mega data from phil's old version, kelli's data, and phil's new version. Comments and details are in the notebook.

Need to optimize code for general use.

review-notebook-app[bot] commented 3 months ago

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