Gene annotation should also generate relevant files for `--phenoIDFile`

cumc / xqtl-protocol

Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium

https://cumc.github.io/xqtl-protocol/

MIT License

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Gene annotation should also generate relevant files for `--phenoIDFile` #942

Open gaow opened 3 months ago

gaow commented 3 months ago

Raised today by @Bale4 who seems to have to manually adjust / rearrange columns for phenoIDFile when performing sQTL analysis. I think we should generate this file from our pipeline, when we annotate splicing events to genes.