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cumc / xqtl-protocol

Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
https://cumc.github.io/xqtl-protocol/
MIT License
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error in association analysis #985

Open rfeng2023 opened 2 months ago

rfeng2023 commented 2 months ago

sQTL association analysis in job 8eaa4402df95e92a on opcenter 23.22.157.8 showing

ERROR: cis_1 (id=8eaa4402df95e92a) returns an error. ERROR: [cis_1]: [0]: Failed to execute python /home/bst2126/output/cis_1_0_258db4a1.py exitcode=139, workdir=/home/bst2126/data, stdout=/home/bst2126/output/psichomics_raw_data_bedded.qqnorm.imputed.bed.formated.bed.chr10_chr10_msex.cis_qtl.stdout, stderr=/home/bst2126/output/psichomics_raw_data_bedded.qqnorm.imputed.bed.formated.bed.chr10_chr10_msex.cis_qtl.stderr

error info is:

Error in mutate(): :information_source: In argument: qvalue_main = compute_qvalues(pvalue). :information_source: In group 1: molecular_trait_id = "A3SS_10_+_100381448_100388037_100388034_ENSG00000235823". Caused by error in qvalue(): ! p-values not in valid range [0, 1].