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Cupid IDE and Code Generation Tool for Earth System Models
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Error thrown (NullPointerException) parsing MOM5 NUOPC Cap #23

Closed rsdunlapiv closed 8 years ago

rsdunlapiv commented 9 years ago

Parsing the MOM5 cap gives a NPE:

!ENTRY org.eclipse.ui.workbench 4 2 2015-05-15 17:01:46.465
!MESSAGE Problems occurred when invoking code from plug-in: "org.eclipse.ui.workbench".
!STACK 0
java.lang.NullPointerException
    at org.earthsystemmodeling.cupid.codedb.CodeDBVisitor.visitASTOnlyNode(CodeDBVisitor.java:220)
    at org.eclipse.photran.internal.core.parser.ASTOnlyNode.accept(ASTOnlyNode.java:131)
    at org.eclipse.photran.internal.core.parser.ASTVisitor.traverseChildren(ASTVisitor.java:21)
    at org.eclipse.photran.internal.core.parser.ASTVisitor.visitASTListNode(ASTVisitor.java:26)
    at org.eclipse.photran.internal.core.parser.ASTSeparatedListNode.accept(ASTSeparatedListNode.java:170)
    at org.eclipse.photran.internal.core.parser.ASTVisitor.traverseChildren(ASTVisitor.java:21)
    at org.earthsystemmodeling.cupid.codedb.CodeDBVisitor.traverseChildren(CodeDBVisitor.java:173)
    at org.earthsystemmodeling.cupid.codedb.CodeDBVisitor.visitASTUseStmtNode(CodeDBVisitor.java:210)
    at org.eclipse.photran.internal.core.parser.ASTUseStmtNode.accept(ASTUseStmtNode.java:120)
    at org.eclipse.photran.internal.core.parser.ASTVisitor.traverseChildren(ASTVisitor.java:21)
    at org.eclipse.photran.internal.core.parser.ASTVisitor.visitASTListNode(ASTVisitor.java:26)
    at org.eclipse.photran.internal.core.parser.ASTListNode.accept(ASTListNode.java:131)
    at org.eclipse.photran.internal.core.parser.ASTVisitor.traverseChildren(ASTVisitor.java:21)
    at org.earthsystemmodeling.cupid.codedb.CodeDBVisitor.traverseChildren(CodeDBVisitor.java:173)
    at org.earthsystemmodeling.cupid.codedb.CodeDBVisitor.visitASTModuleNode(CodeDBVisitor.java:202)
    at org.eclipse.photran.internal.core.parser.ASTModuleNode.accept(ASTModuleNode.java:74)
    at org.eclipse.photran.internal.core.parser.ASTVisitor.traverseChildren(ASTVisitor.java:21)
    at org.eclipse.photran.internal.core.parser.ASTVisitor.visitASTListNode(ASTVisitor.java:26)
    at org.eclipse.photran.internal.core.parser.ASTListNode.accept(ASTListNode.java:131)
    at org.eclipse.photran.internal.core.parser.ASTVisitor.traverseChildren(ASTVisitor.java:21)
    at org.earthsystemmodeling.cupid.codedb.CodeDBVisitor.traverseChildren(CodeDBVisitor.java:173)
    at org.earthsystemmodeling.cupid.codedb.CodeDBVisitor.visitASTExecutableProgramNode(CodeDBVisitor.java:194)
    at org.eclipse.photran.internal.core.parser.ASTExecutableProgramNode.accept(ASTExecutableProgramNode.java:61)
    at org.eclipse.photran.internal.core.FortranAST.accept(FortranAST.java:53)
    at org.earthsystemmodeling.cupid.codedb.CodeDBIndex.indexAST(CodeDBIndex.java:203)
    at org.earthsystemmodeling.cupid.views.NUOPCViewContentProvider2.inputChanged(NUOPCViewContentProvider2.java:138)
    at org.eclipse.jface.viewers.ContentViewer.setInput(ContentViewer.java:288)
    at org.eclipse.jface.viewers.StructuredViewer.setInput(StructuredViewer.java:1675)
    at org.earthsystemmodeling.cupid.views.NUOPCView$4.partActivated(NUOPCView.java:777)
    at org.eclipse.ui.internal.PartService$6.run(PartService.java:149)
    at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42)
    at org.eclipse.ui.internal.PartService.partActivated(PartService.java:146)
    at org.eclipse.ui.internal.WorkbenchPage$17.run(WorkbenchPage.java:4870)
    at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42)
    at org.eclipse.ui.internal.WorkbenchPage.firePartActivated(WorkbenchPage.java:4867)
    at org.eclipse.ui.internal.WorkbenchPage.access$18(WorkbenchPage.java:4846)
    at org.eclipse.ui.internal.WorkbenchPage$E4PartListener.partActivated(WorkbenchPage.java:210)
    at org.eclipse.e4.ui.internal.workbench.PartServiceImpl$3.run(PartServiceImpl.java:236)
    at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42)
    at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.firePartActivated(PartServiceImpl.java:233)
    at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.activate(PartServiceImpl.java:684)
    at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.activate(PartServiceImpl.java:615)
    at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.activate(PartServiceImpl.java:603)
    at org.eclipse.ui.internal.WorkbenchPage.busyOpenEditor(WorkbenchPage.java:3218)
    at org.eclipse.ui.internal.WorkbenchPage.access$23(WorkbenchPage.java:3125)
    at org.eclipse.ui.internal.WorkbenchPage$9.run(WorkbenchPage.java:3107)
    at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:70)
    at org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:3102)
    at org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:3066)
    at org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:3056)
    at org.eclipse.cdt.internal.ui.util.EditorUtility.openInEditor(EditorUtility.java:268)
    at org.eclipse.cdt.internal.ui.util.EditorUtility.openInEditor(EditorUtility.java:165)
    at org.eclipse.cdt.internal.ui.util.EditorUtility.openInEditor(EditorUtility.java:149)
    at org.eclipse.cdt.internal.ui.navigator.OpenCElementAction.run(OpenCElementAction.java:52)
    at org.eclipse.ui.actions.RetargetAction.run(RetargetAction.java:229)
    at org.eclipse.ui.navigator.CommonNavigatorManager$3.open(CommonNavigatorManager.java:185)
    at org.eclipse.ui.OpenAndLinkWithEditorHelper$InternalListener.open(OpenAndLinkWithEditorHelper.java:48)
    at org.eclipse.jface.viewers.StructuredViewer$2.run(StructuredViewer.java:853)
    at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42)
    at org.eclipse.ui.internal.JFaceUtil$1.run(JFaceUtil.java:50)
    at org.eclipse.jface.util.SafeRunnable.run(SafeRunnable.java:178)
    at org.eclipse.jface.viewers.StructuredViewer.fireOpen(StructuredViewer.java:850)
    at org.eclipse.jface.viewers.StructuredViewer.handleOpen(StructuredViewer.java:1142)
    at org.eclipse.ui.navigator.CommonViewer.handleOpen(CommonViewer.java:462)
    at org.eclipse.jface.viewers.StructuredViewer$6.handleOpen(StructuredViewer.java:1249)
    at org.eclipse.jface.util.OpenStrategy.fireOpenEvent(OpenStrategy.java:278)
    at org.eclipse.jface.util.OpenStrategy.access$2(OpenStrategy.java:272)
    at org.eclipse.jface.util.OpenStrategy$1.handleEvent(OpenStrategy.java:313)
    at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
    at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4454)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1388)
    at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3799)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3409)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$9.run(PartRenderingEngine.java:1151)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1032)
    at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:148)
    at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:636)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
    at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:579)
    at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:150)
    at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:135)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:380)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:235)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:497)
    at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:648)
    at org.eclipse.equinox.launcher.Main.basicRun(Main.java:603)
    at org.eclipse.equinox.launcher.Main.run(Main.java:1465)
    at org.eclipse.equinox.launcher.Main.main(Main.java:1438)

This is the use section -- I suspect the operators are a problem;

  use constants_mod,            only: constants_init
  use data_override_mod,        only: data_override_init, data_override
  use diag_manager_mod,         only: diag_manager_init, diag_manager_end
  use field_manager_mod,        only: field_manager_init, field_manager_end
  use fms_mod,                  only: fms_init, fms_end, open_namelist_file, check_nml_error
  use fms_mod,                  only: close_file, file_exist, uppercase
  use fms_io_mod,               only: fms_io_exit
  use mpp_domains_mod,          only: domain2d, mpp_get_compute_domain, mpp_get_compute_domains
  use mpp_domains_mod,          only: mpp_get_ntile_count, mpp_get_pelist, mpp_get_global_domain
  use mpp_domains_mod,          only: mpp_get_domain_npes, mpp_global_field
  use mpp_io_mod,               only: mpp_open, MPP_RDONLY, MPP_ASCII, MPP_OVERWR, MPP_APPEND, mpp_close, MPP_SINGLE
  use mpp_mod,                  only: input_nml_file, mpp_error, FATAL, NOTE, mpp_pe, mpp_npes, mpp_set_current_pelist
  use mpp_mod,                  only: stdlog, stdout, mpp_root_pe, mpp_clock_id
  use mpp_mod,                  only: mpp_clock_begin, mpp_clock_end, MPP_CLOCK_SYNC
  use mpp_mod,                  only: MPP_CLOCK_DETAILED, CLOCK_COMPONENT, MAXPES
  use time_interp_external_mod, only: time_interp_external_init
  use time_manager_mod,         only: set_calendar_type, time_type, increment_date
  use time_manager_mod,         only: set_time, set_date, get_time, get_date, month_name
  use time_manager_mod,         only: GREGORIAN, JULIAN, NOLEAP, THIRTY_DAY_MONTHS, NO_CALENDAR
  use time_manager_mod,         only: operator( <= ), operator( < ), operator( >= )
  use time_manager_mod,         only: operator( + ),  operator( - ), operator( / )
  use time_manager_mod,         only: operator( * ), operator( /= ), operator( > )
  use time_manager_mod,         only: date_to_string
  use time_manager_mod,         only: fms_get_calendar_type => get_calendar_type
  use ocean_domains_mod,        only: get_local_indices, get_global_indices, get_domain_offsets
  use ocean_model_mod,          only: ocean_model_init , update_ocean_model, ocean_model_end, get_ocean_grid
  use ocean_model_mod,          only: ocean_model_restart, ocean_public_type, ocean_state_type
  use ocean_model_mod,          only: ocean_model_data_get
  use ocean_types_mod,          only: ice_ocean_boundary_type, ocean_grid_type

  use ESMF
  use NUOPC
  use NUOPC_Model, only: &
    model_routine_SS      => SetServices, &
    model_label_SetClock  => label_SetClock, &
    model_label_Advance   => label_Advance

  use time_utils_mod
rsdunlapiv commented 8 years ago

Fixed.