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HMMERutils
A bunch of convenient functions to search for homologous sequences using the HMMER API, annotate them taxonomically, calculate physicochemical properties and facilitate exploratory analysis of homologous sequence data.
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[FEAT] Improve CI (too slow)
#30
currocam
opened
1 year ago
0
[BUG] phmmer currently not working after server update
#29
currocam
opened
1 year ago
0
refactor: styler & linter
#28
currocam
opened
1 year ago
0
[BUG] Bind rows error
#27
Juane99
closed
1 year ago
1
[BUG] Bind rows error when a search doesn't return any result
#26
currocam
closed
1 year ago
0
Fix "Warnings + Notes Workflow fix"
#25
currocam
closed
1 year ago
2
Warnings + Notes Workflow fix
#24
Juane99
closed
1 year ago
0
Warnigs + Notes Workflow fix
#23
Juane99
closed
1 year ago
0
Update Docs + Windows Issue
#22
Juane99
closed
1 year ago
0
Bug: filter_hmmer creates empty rows
#21
currocam
closed
1 year ago
1
[BUG] Extract domains columns incorrect type
#20
Juane99
closed
1 year ago
0
Update docs
#19
currocam
closed
1 year ago
0
feat: add evalues dot plot
#18
currocam
closed
1 year ago
0
[BUG] Extract domains columns are not always vectors
#17
currocam
closed
1 year ago
0
A Cleveland dot plot with the evalues of the domains and sequences.
#16
currocam
closed
1 year ago
0
feat: 14 add pairwise function
#15
currocam
closed
1 year ago
0
Add pairwise function
#14
Juane99
closed
1 year ago
0
feat: filter hmmer function
#13
Juane99
closed
2 years ago
0
feat: accept fasta files as input
#12
currocam
closed
2 years ago
0
Support fasta file as input to search functions
#11
currocam
closed
2 years ago
0
Add filter by evalue function
#10
currocam
closed
2 years ago
1
docs: add data examples documentation
#9
currocam
closed
2 years ago
0
Add documentation objects
#8
currocam
closed
2 years ago
0
fix: Ubuntu Set BiocVersion
#7
Juane99
closed
2 years ago
1
[BUG] Fix Ubuntu Set BiocVersion
#6
currocam
closed
2 years ago
1
feat: add extract_from_hmmer function
#5
Juane99
closed
2 years ago
0
extract_from_hmmer
#4
Juane99
closed
2 years ago
4
fix: CI
#3
currocam
closed
2 years ago
0
To-do list
#2
currocam
closed
1 year ago
0
feat: minimal version
#1
currocam
closed
2 years ago
0