LightGbm seems to be way to loud in tidymodels/parsnip/treesnip

[Steviey]

LightGbm seems to be way to loud in tidymodels/treesnip/parsnip. The native verbose-setting has multiple options....

https://github.com/microsoft/LightGBM/issues/4949

[dfalbel]

Yeah, I have experimented disabling it as much as possible but it seems it's not completely possible to be fully disable it. If you have a reprex that shows the messages it would be great!

[topepo]

I had planned on using something like capture.output() but I suspect that the noise is coming from compiled code.

[topepo]

I think that negative verbose values do the job:

library(lightgbm)
#> Loading required package: R6

data(agaricus.train, package = "lightgbm")
train <- agaricus.train
dtrain <- lgb.Dataset(train$data, label = train$label)
data(agaricus.test, package = "lightgbm")
test <- agaricus.test
dtest <-
  lgb.Dataset.create.valid(dtrain, test$data, label = test$label)
params <- list(
  objective = "regression",
  metric = "l2",
  min_data = 1L,
  learning_rate = 1.0
)

valids <- list(test = dtest)
model <- lgb.train(
  params = params,
  data = dtrain,
  nrounds = 5L,
  valids = valids,
  early_stopping_rounds = 3L,
  verbose = -1
)

^{Created on 2022-02-27 by the reprex package (v2.0.1)}

Session info

``` r sessioninfo::session_info() #> ─ Session info ─────────────────────────────────────────────────────────────── #> setting value #> version R version 4.1.2 (2021-11-01) #> os macOS Catalina 10.15.7 #> system x86_64, darwin17.0 #> ui X11 #> language (EN) #> collate en_US.UTF-8 #> ctype en_US.UTF-8 #> tz America/New_York #> date 2022-02-27 #> pandoc 2.14.0.3 @ /Applications/RStudio.app/Contents/MacOS/pandoc/ (via rmarkdown) #> #> ─ Packages ─────────────────────────────────────────────────────────────────── #> package * version date (UTC) lib source #> backports 1.4.1 2021-12-13 [1] CRAN (R 4.1.0) #> cli 3.2.0 2022-02-14 [1] CRAN (R 4.1.2) #> crayon 1.5.0 2022-02-14 [1] CRAN (R 4.1.2) #> data.table 1.14.2 2021-09-27 [1] CRAN (R 4.1.0) #> digest 0.6.29 2021-12-01 [1] CRAN (R 4.1.0) #> ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.1.0) #> evaluate 0.15 2022-02-18 [1] CRAN (R 4.1.2) #> fansi 1.0.2 2022-01-14 [1] CRAN (R 4.1.2) #> fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.1.0) #> fs 1.5.2 2021-12-08 [1] CRAN (R 4.1.0) #> glue 1.6.2 2022-02-24 [1] CRAN (R 4.1.2) #> highr 0.9 2021-04-16 [1] CRAN (R 4.1.0) #> htmltools 0.5.2 2021-08-25 [1] CRAN (R 4.1.0) #> jsonlite 1.8.0 2022-02-22 [1] CRAN (R 4.1.2) #> knitr 1.37 2021-12-16 [1] CRAN (R 4.1.0) #> lattice 0.20-45 2021-09-22 [1] CRAN (R 4.1.2) #> lifecycle 1.0.1 2021-09-24 [1] CRAN (R 4.1.0) #> lightgbm * 3.3.2 2022-01-14 [1] CRAN (R 4.1.2) #> magrittr 2.0.2 2022-01-26 [1] CRAN (R 4.1.2) #> Matrix 1.3-4 2021-06-01 [1] CRAN (R 4.1.2) #> pillar 1.7.0.9000 2022-02-24 [1] Github (r-lib/pillar@ccb2449) #> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.1.0) #> purrr 0.3.4 2020-04-17 [1] CRAN (R 4.1.0) #> R.cache 0.15.0 2021-04-30 [1] CRAN (R 4.1.0) #> R.methodsS3 1.8.1 2020-08-26 [1] CRAN (R 4.1.0) #> R.oo 1.24.0 2020-08-26 [1] CRAN (R 4.1.0) #> R.utils 2.11.0 2021-09-26 [1] CRAN (R 4.1.0) #> R6 * 2.5.1 2021-08-19 [1] CRAN (R 4.1.0) #> reprex 2.0.1 2021-08-05 [1] CRAN (R 4.1.0) #> rlang 1.0.1 2022-02-03 [1] CRAN (R 4.1.2) #> rmarkdown 2.11 2021-09-14 [1] CRAN (R 4.1.0) #> rstudioapi 0.13 2020-11-12 [1] CRAN (R 4.1.0) #> sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.1.0) #> stringi 1.7.6 2021-11-29 [1] CRAN (R 4.1.0) #> stringr 1.4.0 2019-02-10 [1] CRAN (R 4.1.0) #> styler 1.6.2 2021-09-23 [1] CRAN (R 4.1.0) #> tibble 3.1.6 2021-11-07 [1] CRAN (R 4.1.0) #> utf8 1.2.2 2021-07-24 [1] CRAN (R 4.1.0) #> vctrs 0.3.8 2021-04-29 [1] CRAN (R 4.1.0) #> withr 2.4.3 2021-11-30 [1] CRAN (R 4.1.0) #> xfun 0.29 2021-12-14 [1] CRAN (R 4.1.0) #> yaml 2.3.5 2022-02-21 [1] CRAN (R 4.1.2) #> #> [1] /Library/Frameworks/R.framework/Versions/4.1/Resources/library #> #> ────────────────────────────────────────────────────────────────────────────── ```