cusbg / prankweb

Web application for protein-ligand binding sites analysis and visualization
https://prankweb.cz
Apache License 2.0
7 stars 3 forks source link

Performance issues with protein utils #20

Closed skodapetr closed 3 years ago

skodapetr commented 3 years ago

Describe the bug Running protein-utils on 19HC, cause performance issues when clustering ligands.

To Reproduce

  1. Run .\protein-utils\bin\protein-utils.bat -a p2rank-web --structure=./19HC.pdb --prediction=./19hc.pdb.gz_predictions.csv --residues=./19hc.pdb.gz_residues.csv --output-pocket=./prediction.json --output-sequence=./sequence.json

Expected behavior The execution finish in reasonable time.