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cusbg / prankweb

Web application for protein-ligand binding sites analysis and visualization
https://prankweb.cz
Apache License 2.0
7 stars 3 forks source link

Fix protein-utils warning #32

Closed skodapetr closed 2 years ago

skodapetr commented 3 years ago

From log

WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by com.sun.xml.bind.v2.runtime.reflect.opt.Injector (file:/opt/protein-utils/lib/jaxb-impl-2.3.0.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int)
WARNING: Please consider reporting this to the maintainers of com.sun.xml.bind.v2.runtime.reflect.opt.Injector
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release

This is issue with jaxb-impl 2.3.0 use by BioJava. The jaxb-impl 2.4.0 should be fixed, but it is not used by BioJava. So we need to monitor BioJava for updates.

skodapetr commented 2 years ago

There is now different warning

WARNING: package java.rmi.activation not in java.rmi
WARNING: package java.security.acl not in java.base

but as there is nothing we can do about it, just update the dependencies, there is little point for this issue to remain open.