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cusbg / prankweb

Web application for protein-ligand binding sites analysis and visualization
https://prankweb.cz
Apache License 2.0
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Add option to output additional residue identifiers to protein-utils PrepareForP2Rrank #62

Closed davidjakubec closed 2 years ago

davidjakubec commented 3 years ago

Hi,

the protein-utils PrepareForP2Rrank command can be currently used to generate chain_${id}.fasta files for each entity in a PDB file. I think it would be useful if it also generated a file, e.g., chain_${id}.csv, in which for each residue in the corresponding FASTA file, one could find its chain_ID, insertion_code, and residue_ID, i.e., identifiers necessary to uniquely specify the residue. These would then allow the creation of CSV files to be used with the CSV feature https://github.com/cusbg/p2rank-framework/wiki/P2Rank-Custom-Feature.

David

davidjakubec commented 2 years ago

Closed as the FASTA file creation has been moved to p2rank; CSV feature identifier export can be probably moved there as well if needed.