search

cusbg / prankweb

Web application for protein-ligand binding sites analysis and visualization
https://prankweb.cz
Apache License 2.0
7 stars 3 forks source link

Make all PDB and AF predictions available as download. #72

Closed davidhoksza closed 2 years ago

davidhoksza commented 2 years ago

Let the user download all the prediction for PDB and AF.

There should be a new Download section where the user will be have the possibility to download all the PDB or AF predictions => 2 links. In the optimal scenario, the section should feature for each archive to which date the structures were downloaded/predicted and how many structures are in each of the archives.

skodapetr commented 2 years ago

@davidhoksza What should be content of the archive? all the output from p2rank or only the CSV files?

davidhoksza commented 2 years ago

Depends on the size of the archive. I would go for everything given the size is manageable.

rdk commented 2 years ago

I'm guessing it will be 50-100GB or more just for PDB with visualizations. How about ftp or rsync access?

skodapetr commented 2 years ago

The last estimate I got is that visualizations should consume roughly 130 GB for PDB and at least twice as much for AF. The whole "directory" may be 200GB for PDB and 400GB AF.

skodapetr commented 2 years ago

The files with only predictions are now available, yet I think we improve the access by better structuring the content or providing other interface e.g. FTP.