Closed iancharest closed 3 years ago
subjix = 1 sourcedata = np.r_[ np.tile( f'{nsd_dir}/freesurfer/subj{subjix:02d}/label/lh.Kastner2015.mgz', 3), np.tile( f'{nsd_dir}/freesurfer/subj{subjix:02d}/label/rh.Kastner2015.mgz', 3) ].tolist() sourcespace = [ 'lh.layerB1', 'lh.layerB2', 'lh.layerB3', 'rh.layerB1', 'rh.layerB2', 'rh.layerB3' ] targetspace = 'anat0pt8' nsd_mapdata( subjix, sourcespace, targetspace, sourcedata, interptype='surfacewta', badval=-1, outputfile='testH.nii.gz') ## -- End pasted text -- --------------------------------------------------------------------------- FileNotFoundError Traceback (most recent call last) ~/env-EL7-skylake/lib/python3.7/site-packages/nibabel/loadsave.py in load(filename, **kwargs) 41 try: ---> 42 stat_result = os.stat(filename) 43 except OSError: FileNotFoundError: [Errno 2] No such file or directory: "/rds/projects/c/charesti-start/data/NSD/nsddata/ppdata/subj01/transforms/['lh.layerB1', 'lh.layerB2', 'lh.layerB3', 'rh.layerB1', 'rh.layerB2', 'rh.layerB3']-to-anat0pt8.nii.gz" During handling of the above exception, another exception occurred: FileNotFoundError Traceback (most recent call last) <ipython-input-19-ce7c18cadb74> in <module> 24 interptype='surfacewta', 25 badval=-1, ---> 26 outputfile='testH.nii.gz') /rds/projects/c/charesti-start/software/nsdcode/python/mapdata/nsd_mapdata.py in nsd_mapdata(subjix, sourcespace, targetspace, sourcedata, interptype, badval, outputfile, outputclass, fsdir) 177 178 # load transform --> 179 a1_data = load_transform(casenum, tfile) 180 181 # load sourcedata /rds/projects/c/charesti-start/software/nsdcode/python/mapdata/load_data.py in load_transform(casenum, tfile) 17 # load transform 18 if casenum == 1: ---> 19 a1_img = nib.load(tfile) 20 a1_data = a1_img.get_fdata() # X x Y x Z x 3 21 elif casenum in (2, 3): ~/env-EL7-skylake/lib/python3.7/site-packages/nibabel/loadsave.py in load(filename, **kwargs) 42 stat_result = os.stat(filename) 43 except OSError: ---> 44 raise FileNotFoundError("No such file or no access: '%s'" % filename) 45 if stat_result.st_size <= 0: 46 raise ImageFileError("Empty file: '%s'" % filename) FileNotFoundError: No such file or no access: '/rds/projects/c/charesti-start/data/NSD/nsddata/ppdata/subj01/transforms/['lh.layerB1', 'lh.layerB2', 'lh.layerB3', 'rh.layerB1', 'rh.layerB2', 'rh.layerB3']-to-anat0pt8.nii.gz'
fixed with 026b6ec