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cwalker4 / deepiv-gwas

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How do we identify important genes? #8

Closed cwalker4 closed 6 years ago

cwalker4 commented 6 years ago

It's not like we have coefficients on our inputs that neatly describe their effect on the outcome; do we have some script that fixes all other genes at a baseline, then perturbs a single gene at a time to look at its effect on y?

billyferguson commented 6 years ago

Ya this was a thing that I wanted to ask Susan about. I think we just need to simulate the results for a bunch of different ps. However, with 60,000+ ps, that's non-trivial.

cwalker4 commented 6 years ago

Should I be there when you talk to Susan about it?

cwalker4 commented 6 years ago

@billyferguson discussed w/ susan.