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cwieder / py-ssPA

Single sample pathway analysis tools for omics data
GNU General Public License v3.0
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Bug fix to download KEGG database and add tqdm library to add progress bar when downloading DB #1

Closed mbrochut closed 1 year ago

mbrochut commented 1 year ago

I couldn't download the mouse library from KEGG and found that the regex was the problem. I fix it by removing the "path:" part. Warning: I didn't check for other organism than mouse

I have also add the library tqdm to have a progress bar visualisation when downloading from KEGG database.

cwieder commented 1 year ago

@mbrochut Thank you for your pull request which has now been merged into the sspa package. It's great to have your contributions and I'd like to acknowledge that by adding your name to the contributor list if you would like? Let me know (cw2019@ic.ac.uk). Thanks again!