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cwieder / py-ssPA

Single sample pathway analysis tools for omics data
GNU General Public License v3.0
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sspa_walkthrough_colab_v1_0_0.ipynb not working #4

Open KCrux opened 1 week ago

KCrux commented 1 week ago

Hello :), I wanted to try the example, but there is an error when converting the compound names (https://colab.research.google.com/drive/1rUVW7tYKRdVBikpAO2CUk2RkSwrFubLi?usp=sharing#scrollTo=2bfbc3c5)

image

Can someone help out?

cwieder commented 2 days ago

Hi,

Thank you for raising this issue. There is an issue on the MetaboAnalyst API side of things causing this for some time unfortunately. I recommend using the web server: https://www.metaboanalyst.ca/faces/upload/ConvertView.xhtml and uploading the CSV back into the notebook, as suggested in the code snippets below that section.

We are working on adding a new backend for this feature which does not rely on MetaboAnalyst API but rather some in-house code we have developed. But for now please try the workaround mentioned.

Thanks for your interest in the package and please get back to us if you encounter any more issues or have feature requests. C