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cxzhu / Paired-Tag

Analysis of Paired-Tag datasets
MIT License
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can we replace "reachtools convert2" with "samtools fastq" for sam2fastq function? #20

Closed zhangxf4498 closed 1 year ago

zhangxf4498 commented 1 year ago

can we replace "reachtools convert2" with "samtools fastq" for sam2fastq function?

cxzhu commented 1 year ago

No. samtools fastq does not natively support extracting Paired-Tag cellular barcodes.