Closed cycle20 closed 3 years ago
Failed workflow https://github.com/cycle20/scancer/runs/3382057150?check_suite_focus=true clue_76_logs_322.zip
2021-08-20 12:56:33 :: from cache: https://nctr-crs.fda.gov/fdalabel/services/spl/summaries?pert=trometamol&ingr=FALSE fdaLabel :: trometamol :: results not found # sleeping 30 secs Error: Problem with `mutate()` column `fdaSearchResults`. ℹ `fdaSearchResults = list(getFDALabelResults(pert_iname))`. ✖ Timeout was reached: [nctr-crs.fda.gov] Connection timed out after 10001 milliseconds ℹ The error occurred in row 3536. Backtrace: █ 1. ├─global::main() 2. │ └─global::patch(clueTable) 3. │ └─global::fdaLabel(clueTable) 4. │ └─clueTable %>% mutate(fdaSearchResults = list(getFDALabelResults(pert_iname))) 5. ├─dplyr::mutate(., fdaSearchResults = list(getFDALabelResults(pert_iname))) 6. ├─dplyr:::mutate.data.frame(., fdaSearchResults = list(getFDALabelResults(pert_iname))) 7. │ └─dplyr:::mutate_cols(.data, ..., caller_env = caller_env()) 8. │ ├─base::withCallingHandlers(...) 9. │ └─mask$eval_all_mutate(quo) 10. ├─getFDALabelResults(pert_iname) 11. │ └─global::getPageCached(...) 12. │ └─downloadFunc(url) 13. │ └─httr::POST(...) 14. │ └─httr:::request_perform(req, hu$handle$handle) 15. │ ├─httr:::request_fetch(req$output, req$url, handle) 16. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle) 17. │ └─curl::curl_fetch_memory(url, handle = handle) 18. └─base::.handleSimpleError(...) 19. └─dplyr:::h(simpleError(msg, call)) There were 29 warnings (use warnings() to see them) Execution halted Error: Process completed with exit code 1.
https://github.com/cycle20/scancer/runs/3382210926?check_suite_focus=true clue_77_logs_323.zip
I couldn't reproduce the Connection timed out after 10001 milliseconds issue, however another issue encountered and fixed during local testing of getFDALabelResult
Connection timed out after 10001 milliseconds
getFDALabelResult
Failed workflow https://github.com/cycle20/scancer/runs/3382057150?check_suite_focus=true clue_76_logs_322.zip
https://github.com/cycle20/scancer/runs/3382210926?check_suite_focus=true clue_77_logs_323.zip