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cytomine / Cytomine-IMS

Cytomine-IMS: Image Management System
GNU Lesser General Public License v2.1
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Missing metadata key prevents image deployment. #33

Open kmuw opened 3 years ago

kmuw commented 3 years ago

When uploading a mrxs file without the key GENERAL.OBJECTIVE_MAGNIFICATION in slidedat.ini, the image is stuck in the status Detecting format. Docker logs from IMS reveal the error:

java.util.concurrent.ExecutionException: java.lang.Exception: Openslide is unable to read /data/asd/Untitled.mrxs: Key file does not have key 'OBJECTIVE_MAGNIFICATION' in group 'GENERAL'

The mrxs has been created by converting a tiff file without metadata using the 3DHistech Slide Converter Version 2.3.2.119024

Example file attached: asd.zip

geektortoise commented 1 year ago

Hello team, Does this issue still occur with the new PIMS ?

Have a nice day.