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cytomining / profiling-handbook

Image-based Profiling Handbook
https://cytomining.github.io/profiling-handbook/
Creative Commons Zero v1.0 Universal
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Conditional Travis Build #20

Closed gwaybio closed 5 years ago

gwaybio commented 5 years ago

Do we want to deploy the handbook for every pull request? For example, in #19, travis builds and deploys the changes to the gh page at every commit. We should consider performing a conditional build with travis to only deploy when code is merged to master. another relevant post.

shntnu commented 5 years ago

Indeed, we do not want to deploy for every PR.

Conditional build would be perfect! Would it just be adding if: branch = master to the .travis? Can you fix?

gwaybio commented 5 years ago

Yep, will do!

gwaybio commented 5 years ago

accidentally closed!

gwaybio commented 5 years ago

Still exiting with error

Deploying application sh: 1: _deploy.sh: not found Already up to date! HEAD detached at 5864c2d nothing to commit, working tree clean Dropped refs/stash@{0} (3fcc1e7f25794e1faf27ea64daf5355f48e9dafb) Script failed with status 127 failed to deploy

Will look into tomorrow

gwaybio commented 5 years ago

new error! But at least an error moving in the right direction

Deploying application Cloning into 'book-output'... cp: cannot stat ‘../_book/*’: No such file or directory Already up to date! HEAD detached at 94073dc Untracked files: (use "git add ..." to include in what will be committed) book-output/ nothing added to commit but untracked files present (use "git add" to track) Dropped refs/stash@{0} (c93e485c243dd26e8248e761c6d7ef86b4c73bc7) Script failed with status 1 failed to deploy

My next thought is to also build on master before deploying on master

gwaybio commented 5 years ago

more errors:

Output created: _book/index.html [1] "/home/travis/build/cytomining/profiling-handbook/_book/index.html" The command "./_build.sh" exited with 0. cache.2 store build cache 0.00s3.62schange detected (content changed, file is created, or file is deleted): /home/travis/R/Library/remotes/DESCRIPTION /home/travis/R/Library/remotes/help/paths.rds /home/travis/R/Library/remotes/help/remotes.rdb /home/travis/R/Library/remotes/help/remotes.rdx /home/travis/R/Library/remotes/Meta/package.rds changes detected, packing new archive uploading master/cache-linux-trusty-e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855--R-3.5.3.tgz cache uploaded dpl_0 1.74s$ rvm $(travis_internal_ruby) --fuzzy do ruby -S gem install dpl Successfully installed dpl-1.10.8 Parsing documentation for dpl-1.10.8 Installing ri documentation for dpl-1.10.8 Done installing documentation for dpl after 0 seconds 1 gem installed dpl.1 Installing deploy dependencies Successfully installed dpl-script-1.10.8 Parsing documentation for dpl-script-1.10.8 Installing ri documentation for dpl-script-1.10.8 Done installing documentation for dpl-script after 0 seconds 1 gem installed dpl.2 Preparing deploy Cleaning up git repository with git stash --all. If you need build artifacts for deployment, set deploy.skip_cleanup: true. See https://docs.travis-ci.com/user/deployment#Uploading-Files-and-skip_cleanup. Saved working directory and index state WIP on (no branch): b3d1b44 Merge pull request #25 from gwaygenomics/build-and-deploy dpl.3 Deploying application Cloning into 'book-output'... cp: cannot stat ‘../_book/*’: No such file or directory Already up to date! HEAD detached at b3d1b44 Untracked files: (use "git add ..." to include in what will be committed) book-output/ nothing added to commit but untracked files present (use "git add" to track) Dropped refs/stash@{0} (1f04355466591a5a2810309d8c7e354a7433b190) Script failed with status 1 failed to deploy

Not sure what is happening now. Too much time spent on this already!

shntnu commented 5 years ago

Feel free to abandon if it’s too painful (and thanks for trying!)

On Tue, Apr 23, 2019 at 5:10 PM Greg Way notifications@github.com wrote:

more errors:

Output created: _book/index.html [1] "/home/travis/build/cytomining/profiling-handbook/_book/index.html" The command "./_build.sh" exited with 0. cache.2 store build cache 0.00s3.62schange detected (content changed, file is created, or file is deleted): /home/travis/R/Library/remotes/DESCRIPTION /home/travis/R/Library/remotes/help/paths.rds /home/travis/R/Library/remotes/help/remotes.rdb /home/travis/R/Library/remotes/help/remotes.rdx /home/travis/R/Library/remotes/Meta/package.rds changes detected, packing new archive uploading master/cache-linux-trusty-e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855--R-3.5.3.tgz cache uploaded dpl_0 1.74s$ rvm $(travis_internal_ruby) --fuzzy do ruby -S gem install dpl Successfully installed dpl-1.10.8 Parsing documentation for dpl-1.10.8 Installing ri documentation for dpl-1.10.8 Done installing documentation for dpl after 0 seconds 1 gem installed dpl.1 Installing deploy dependencies Successfully installed dpl-script-1.10.8 Parsing documentation for dpl-script-1.10.8 Installing ri documentation for dpl-script-1.10.8 Done installing documentation for dpl-script after 0 seconds 1 gem installed dpl.2 Preparing deploy Cleaning up git repository with git stash --all. If you need build artifacts for deployment, set deploy.skip_cleanup: true. See https://docs.travis-ci.com/user/deployment#Uploading-Files-and-skip_cleanup . Saved working directory and index state WIP on (no branch): b3d1b44 https://github.com/cytomining/profiling-handbook/commit/b3d1b4422eeb7698996d53997067fea7faf22b3c Merge pull request #25 https://github.com/cytomining/profiling-handbook/pull/25 from gwaygenomics/build-and-deploy dpl.3 Deploying application Cloning into 'book-output'... cp: cannot stat ‘../_book/*’: No such file or directory Already up to date! HEAD detached at b3d1b44 https://github.com/cytomining/profiling-handbook/commit/b3d1b4422eeb7698996d53997067fea7faf22b3c Untracked files: (use "git add ..." to include in what will be committed) book-output/ nothing added to commit but untracked files present (use "git add" to track) Dropped refs/stash@{0} (1f04355466591a5a2810309d8c7e354a7433b190) Script failed with status 1 failed to deploy

Not sure what is happening now. Too much time spent on this already!

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gwaybio commented 5 years ago

Wooo! #26 did the trick 🎉

https://travis-ci.org/cytomining/profiling-handbook/builds/523689507#L1081

Output created: _book/index.html [1] "/home/travis/build/cytomining/profiling-handbook/_book/index.html" The command "./_build.sh" exited with 0. cache.2 store build cache 0.00s3.72schange detected (content changed, file is created, or file is deleted): /home/travis/R/Library/remotes/DESCRIPTION /home/travis/R/Library/remotes/help/paths.rds /home/travis/R/Library/remotes/help/remotes.rdb /home/travis/R/Library/remotes/help/remotes.rdx /home/travis/R/Library/remotes/Meta/package.rds changes detected, packing new archive uploading PR.26/cache-linux-trusty-e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855--R-3.5.3.tgz cache uploaded Done. Your build exited with 0.

shntnu commented 5 years ago

Congratulations 🎉

On Tue, Apr 23, 2019 at 5:34 PM Greg Way notifications@github.com wrote:

Closed #20 https://github.com/cytomining/profiling-handbook/issues/20.

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