openSession() fails with Cytoscape_v3.10.1 on debian v12

cytoscape / RCy3

New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community

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openSession() fails with Cytoscape_v3.10.1 on debian v12 #211

Closed rafalcode closed 8 months ago

rafalcode commented 10 months ago

default linux installation of Cytoscape has sampleData folder in its root directory openSession() seems to look inside the "framework" subfolder for it causing an error Quick solution is to symbolically link "sampleData" in "framework" aka. /opt/Cytoscape_v3.10.1/framework$ ln -s ../sampleData

AlexanderPico commented 10 months ago

Good catch. That is indeed the solution we recommend. If you have a patch for detecting linux and finding the "right" place consistently across distos, we would welcome it!