cytoscape / RCy3

New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
MIT License
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No return value comes from the cytoscapePing function with the changed base.url parameter. #212

Closed kozo2 closed 1 year ago

kozo2 commented 1 year ago

The screen shot

image

How to reproduce this issue

  1. Install Docker and Docker Compose
  2. run mkdir trycydocker command in your terminal.
  3. run cd trycydocker command in your terminal.
  4. copy .env and compose.yml to the trycydocker directory
  5. run docker-compose up -d command in the trycydocker directory.
  6. open http://localhost:8888/lab and http://localhost:6080/vnc_auto.html in your web browser.
  7. In http://localhost:8888/lab, create a Notebook [for R] and run

    if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
    
    BiocManager::install("RCy3")
    library(RCy3)
    cytoscapePing(base.url = 'http://cytoscape-desktop:1234/v1')
yihangx commented 1 year ago

@kozo2 Can you install devel branch and try it again?

kozo2 commented 1 year ago

@yihangx I installed the devel branch and tried it, but unfortunately, the issue persists. Do you have any other suggestions?

image

yihangx commented 1 year ago

@kozo2 Could you try it again? It worked in my docker image.

kozo2 commented 1 year ago

@yihangx I tried it again (for RCy3_2.21.3.tar.gz). It worked also in my docker image. image