This issue was resolved yesterday in RCy3 2.0.3, but I'm testing the GroupNodesVignette on my laptop and updated to RCy3 2.0.5 and the issue has returned. The command series is the last chunk that returns the error below.
Mark
sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.5
Alex
This issue was resolved yesterday in RCy3 2.0.3, but I'm testing the GroupNodesVignette on my laptop and updated to RCy3 2.0.5 and the issue has returned. The command series is the last chunk that returns the error below.
Mark
Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] BiocStyle_2.8.2 knitr_1.20 RColorBrewer_1.1-2 devtools_1.13.5
[5] dplyr_0.7.5 BiocInstaller_1.30.0 igraph_1.2.1 gplots_3.0.1
[9] RCy3_2.0.5 plyr_1.8.4
loaded via a namespace (and not attached): [1] Rcpp_0.12.17 compiler_3.5.0 pillar_1.2.3 bindr_0.1.1
[5] bitops_1.0-6 tools_3.5.0 digest_0.6.15 evaluate_0.10.1
[9] memoise_1.1.0 tibble_1.4.2 pkgconfig_2.0.1 rlang_0.2.1
[13] graph_1.58.0 yaml_2.1.19 curl_3.2 parallel_3.5.0
[17] bindrcpp_0.2.2 stringr_1.3.1 withr_2.1.2 httr_1.3.1
[21] gtools_3.5.0 caTools_1.17.1 stats4_3.5.0 rprojroot_1.3-2
[25] tidyselect_0.2.4 glue_1.2.0 R6_2.2.2 XML_3.98-1.11
[29] rmarkdown_1.10 RJSONIO_1.3-0 gdata_2.18.0 purrr_0.2.5
[33] magrittr_1.5 backports_1.1.2 htmltools_0.3.6 BiocGenerics_0.26.0 [37] assertthat_0.2.0 KernSmooth_2.23-15 stringi_1.2.3
$name [1] "ALK"
$nodes [1] 63 62 64 65
$internalEdges [1] 99 100 101 131
$externalEdges [1] 1007 1008 1009 1010 1112 139 140 156 141
$collapsed [1] TRUE