Closed ariutta closed 5 years ago
This may be related to #26. Using version 2.1.13, I tried sending the pathway to the test NDEx server like this:
exportNetworkToNDEx(NDEX_USER, NDEX_PWD, isPublic=TRUE, base.url='http://test.ndexbio.org/v2')
But I got this error:
RCy3::commandsPOST, HTTP Error Code: 500 url=http://test.ndexbio.org/v2/commands/network/get%20attribute body={ "network": "current", "namespace": "default", "columnList": "SUID" } Error: $ operator is invalid for atomic vectors Execution halted
If I use exportNetworkToNDEx(NDEX_USER, NDEX_PWD, isPublic=TRUE, base.url='http://test.ndexbio.org')
exportNetworkToNDEx(NDEX_USER, NDEX_PWD, isPublic=TRUE, base.url='http://test.ndexbio.org')
I get:
RCy3::commandsPOST, HTTP Error Code: 404 url=http://test.ndexbio.org/commands/network/get%20attribute body={ "network": "current", "namespace": "default", "columnList": "SUID" } Error in file(con, "r") : cannot open the connection Calls: exportNetworkToNDEx -> getNetworkSuid -> commandsPOST Execution halted
I suspect this is by design. My mistake for thinking we should automate to the dev/test server. Let's just focus on automation for the production server case.
This may be related to #26. Using version 2.1.13, I tried sending the pathway to the test NDEx server like this:
But I got this error:
If I use
exportNetworkToNDEx(NDEX_USER, NDEX_PWD, isPublic=TRUE, base.url='http://test.ndexbio.org')
I get: